STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rskd-1PX domain-containing protein. (848 aa)    
Predicted Functional Partners:
F13E9.1
PX domain-containing protein.
   
  
 0.816
tag-77
Uncharacterized protein.
   
  
 0.805
pld-1
Phospholipase.
   
 
 0.798
sec-22
Yeast SEC homolog; Belongs to the synaptobrevin family.
   
 
 0.791
wdfy-2
WD repeat and FYVE domain-containing protein 2; Plays a role in coelomocyte endocytosis.
   
  
 0.773
rabn-5
FYVE-type domain-containing protein.
   
  
 0.767
F22G12.4
Uncharacterized protein.
   
 
 0.746
use-1
Vesicle transport protein USE1; SNARE that may be involved in targeting and fusion of Golgi- derived retrograde transport vesicles with the ER; Belongs to the USE1 family.
   
 
 0.722
snx-13
Sorting NeXin.
   
  
 0.718
snx-17
Sorting nexin-17 homolog; Critical regulator of endosomal recycling of numerous receptors, channels, and other transmembrane proteins. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)).
    
 
 0.705
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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