STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xpg-1XPG (Xeroderma Pigmentosum group G) DNA repair gene homolog. (820 aa)    
Predicted Functional Partners:
xpf-1
ERCC4 domain-containing protein.
   
 
 0.965
csb-1
CSB (Cockayne Syndrome B) homolog.
   
 
 0.960
xpc-1
XPC (Xeroderma Pigmentosum group C) DNA repair gene homolog.
   
  
 0.956
xpa-1
XPA_C domain-containing protein.
   
 
 0.926
mus-81
ERCC4 domain-containing protein.
   
 
 0.906
ercc-1
ERCC (DNA excision repair protein) homolog.
   
 
 0.905
gtf-2H1
General Transcription Factor homolog.
   
 
 0.897
xpb-1
XPB (Xeroderma Pigmentosum complementation group B) related.
  
 
 0.877
xpd-1
Helicase ATP-binding domain-containing protein.
   
 
 0.871
pcn-1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 
 0.860
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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