STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhr-1Nuclear hormone receptor family member nhr-1; Orphan nuclear receptor. (445 aa)    
Predicted Functional Partners:
ssu-1
Sulfotransfer_1 domain-containing protein.
      
 0.828
C41D11.3
Uncharacterized protein.
   
  
 0.810
ccch-3
C3H1-type domain-containing protein.
      
 0.699
ztf-26
C2H2-type domain-containing protein.
      
 0.694
ztf-17
Zinc finger transcription factor family protein 17.
   
  
 0.678
gly-11
Putative polypeptide N-acetylgalactosaminyltransferase 11; May catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.
      
 0.669
taf-12
TFIID_20kDa domain-containing protein.
    
 
 0.661
bnc-1
BasoNuClin-1 zinc finger protein homolog.
      
 0.618
sul-2
Sulfatase domain-containing protein.
   
  
 0.563
rpl-23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
    
 
 0.544
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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