STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
etr-1RRM domain-containing protein. (589 aa)    
Predicted Functional Partners:
ztf-4
RRM domain-containing protein.
   
 
 0.884
T28B11.1
F-box domain-containing protein.
   
  
 0.707
catp-8
Probable manganese-transporting ATPase catp-8; Mediates manganese transport into the endoplasmic reticulum. The ATPase activity is required for cellular manganese homeostasis.
   
  
 0.660
sup-12
RRM domain-containing protein.
    
 
 0.648
hrpf-1
HnRNP F homolog.
   
 
 0.634
rsp-3
Probable splicing factor, arginine/serine-rich 3; Plays an essential role in embryogenesis.
      
 0.593
swp-1
Protein SWAP; It is a regulator of pre-mRNA splicing (and, possibly, of other RNA processing events). It may regulate its own expression at the level of RNA processing.
   
  
 0.588
bcc-1
SAM domain-containing protein.
   
 
 0.575
mef-2
MADS-box domain-containing protein.
   
  
 0.563
pdi-1
Protein disulfide-isomerase 1; Belongs to the protein disulfide isomerase family.
   
  
 0.560
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.