STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col-146Col_cuticle_N domain-containing protein. (290 aa)    
Predicted Functional Partners:
col-12
Cuticle collagen 12; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment.
  
   
0.876
col-13
Cuticle collagen 13; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment.
  
   
0.806
col-167
Col_cuticle_N domain-containing protein.
   
  
 0.719
nhr-11
Nuclear hormone receptor family member nhr-11; Orphan nuclear receptor.
    
 
 0.699
T21G5.1
Tyrosine-protein kinase.
   
 
 0.687
gska-3
Protein kinase domain-containing protein.
   
 
 0.684
nas-1
Zinc metalloproteinase nas-1; Metalloprotease.
   
 
 0.676
dhs-14
DeHydrogenases, Short chain.
   
 
 0.674
T25B9.6
Uncharacterized protein.
   
  
 0.671
Y57G11C.6
Protein Tyrosine Phosphatase.
   
  
 0.671
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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