ssp-37 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ssp-37

MSP domain-containing protein. (112 aa)

Predicted Functional Partners:

F17E9.3

0.902

F26F12.5

0.902

F32G8.3

0.902

nlp-62

0.902

F59A7.2

0.902

ttr-21

0.850

F45E4.5

0.809

Y43C5A.3

0.807

hrg-3

0.804

nlp-25

0.741

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F17E9.3	F26F12.5	F17E9.3.1	F26F12.5.1	Uncharacterized protein.	Uncharacterized protein.	0.902
F17E9.3	F32G8.3	F17E9.3.1	F32G8.3.1	Uncharacterized protein.	Uncharacterized protein.	0.902
F17E9.3	F45E4.5	F17E9.3.1	F45E4.5b.1	Uncharacterized protein.	Uncharacterized protein.	0.809
F17E9.3	F59A7.2	F17E9.3.1	F59A7.2.1	Uncharacterized protein.	Uncharacterized protein.	0.902
F17E9.3	Y43C5A.3	F17E9.3.1	Y43C5A.3.1	Uncharacterized protein.	Uncharacterized protein.	0.807
F17E9.3	hrg-3	F17E9.3.1	F58E6.7.1	Uncharacterized protein.	Heme Responsive protein.	0.804
F17E9.3	nlp-25	F17E9.3.1	Y43F8C.1.1	Uncharacterized protein.	Neuropeptide-Like Protein.	0.741
F17E9.3	nlp-62	F17E9.3.1	F33D11.8.1	Uncharacterized protein.	Neuropeptide-Like Protein.	0.902
F17E9.3	ssp-37	F17E9.3.1	W02D9.5.1	Uncharacterized protein.	MSP domain-containing protein.	0.902
F17E9.3	ttr-21	F17E9.3.1	F09F3.6.1	Uncharacterized protein.	TransThyretin-Related family domain.	0.850
F26F12.5	F17E9.3	F26F12.5.1	F17E9.3.1	Uncharacterized protein.	Uncharacterized protein.	0.902
F26F12.5	F32G8.3	F26F12.5.1	F32G8.3.1	Uncharacterized protein.	Uncharacterized protein.	0.903
F26F12.5	F45E4.5	F26F12.5.1	F45E4.5b.1	Uncharacterized protein.	Uncharacterized protein.	0.814
F26F12.5	F59A7.2	F26F12.5.1	F59A7.2.1	Uncharacterized protein.	Uncharacterized protein.	0.904
F26F12.5	Y43C5A.3	F26F12.5.1	Y43C5A.3.1	Uncharacterized protein.	Uncharacterized protein.	0.813
F26F12.5	hrg-3	F26F12.5.1	F58E6.7.1	Uncharacterized protein.	Heme Responsive protein.	0.804
F26F12.5	nlp-25	F26F12.5.1	Y43F8C.1.1	Uncharacterized protein.	Neuropeptide-Like Protein.	0.741
F26F12.5	nlp-62	F26F12.5.1	F33D11.8.1	Uncharacterized protein.	Neuropeptide-Like Protein.	0.902
F26F12.5	ssp-37	F26F12.5.1	W02D9.5.1	Uncharacterized protein.	MSP domain-containing protein.	0.902
F26F12.5	ttr-21	F26F12.5.1	F09F3.6.1	Uncharacterized protein.	TransThyretin-Related family domain.	0.854