STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtr-4mRNA transport homolog 4. (1026 aa)    
Predicted Functional Partners:
crn-3
HRDC domain-containing protein.
   
 0.998
crn-5
RNase_PH domain-containing protein.
   
 0.997
exos-9
EXOSome (Multiexonuclease complex) component.
   
 0.997
Y39B6A.33
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis, being required for integration of the 5S RNP into the ribosomal large subunit.
   
 
 0.996
F13H8.2
WD_REPEATS_REGION domain-containing protein.
   
 0.989
exos-2
EXOSome (Multiexonuclease complex) component.
   
 0.989
rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.988
byn-1
Uncharacterized protein byn-1; Belongs to the bystin family.
   
 
 0.988
let-716
Uncharacterized protein.
   
 0.985
exos-7
RNase_PH domain-containing protein.
   
 0.985
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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