STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col-47COLlagen. (234 aa)    
Predicted Functional Partners:
col-42
Col_cuticle_N domain-containing protein.
      
 0.866
col-44
Col_cuticle_N domain-containing protein.
      
 0.698
sqt-2
Col_cuticle_N domain-containing protein.
  
  
 0.669
col-17
COLlagen.
   
  
 0.667
col-43
Col_cuticle_N domain-containing protein.
      
 0.660
dpy-8
Col_cuticle_N domain-containing protein.
  
  
 0.649
col-46
COLlagen.
  
 
0.626
col-128
COLlagen.
  
  
0.481
sacy-1
Suppressor of ACY-4 sterility; Belongs to the DEAD box helicase family.
      
 0.463
qua-1
Protein qua-1; Required for cuticle shedding and normal alae morphology and localization, and subsequently larval development.
   
  
 0.453
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.