STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lys-1Lysozyme-like protein 1; Involved in resistance to Gram-negative bacterium S.marcescens and to bacterium Gram-positive S.aureus infection. (298 aa)    
Predicted Functional Partners:
clec-63
C-type LECtin.
   
 
 0.876
clec-85
C-type lectin domain-containing protein.
   
  
 0.843
spp-1
Saposin B-type domain-containing protein.
   
  
 0.822
ilys-1
Invertebrate LYSozyme.
      
 0.808
C29F3.7
CUB_2 domain-containing protein.
   
  
 0.734
ilys-5
Invertebrate LYSozyme.
   
  
 0.728
clec-67
C-type lectin domain-containing protein.
   
  
 0.724
F55G11.4
CUB_2 domain-containing protein.
   
  
 0.722
dod-22
CUB_2 domain-containing protein.
   
  
 0.717
spp-18
Saposin B-type domain-containing protein.
   
  
 0.708
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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