STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col-109Col_cuticle_N domain-containing protein. (291 aa)    
Predicted Functional Partners:
Y51A2D.14
Uncharacterized protein.
      
 0.807
pqn-74
Chitin-binding type-2 domain-containing protein.
   
 
 0.763
clec-218
C-type LECtin.
    
 
 0.760
nas-30
Zinc metalloproteinase nas-30; Metalloprotease.
   
  
 0.749
fipr-27
FIP (Fungus-Induced Protein) Related.
      
 0.748
T13H5.6
Uncharacterized protein.
      
 0.740
col-97
Col_cuticle_N domain-containing protein.
  
   
0.726
imp-2
Intramembrane protease 2; Acts as intramembrane protease (Probable). In larvae, required for the complete shedding of the cuticle during molting, possibly by regulating cholesterol uptake via lrp-1. Involved in embryonic and larval development ; Belongs to the peptidase A22B family.
      
 0.698
F20G2.5
CUB_2 domain-containing protein.
    
 
 0.697
F45G2.8
Mitochondrial import inner membrane translocase subunit tim-16; Regulates ATP-dependent protein translocation into the mitochondrial matrix; Belongs to the TIM16/PAM16 family.
      
 0.697
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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