STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc-9Rab-GAP TBC domain-containing protein. (1247 aa)    
Predicted Functional Partners:
mau-8
Phosducin domain-containing protein.
   
  
 0.815
nol-9
Polynucleotide 5'-hydroxyl-kinase nol-9; Polynucleotide 5'-kinase involved in rRNA processing.
   
  
 0.805
nlp-17
Neuropeptide-Like Protein.
      
 0.700
tag-273
LIM zinc-binding domain-containing protein.
      
 0.700
srsx-25
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.700
far-6
Fatty Acid/Retinol binding protein.
   
  
 0.699
sdz-6
SKN-1 Dependent Zygotic transcript.
      
 0.697
tbc-14
Rab-GAP TBC domain-containing protein.
   
  
 0.671
C43D7.4
Uncharacterized protein.
      
 0.663
F26F2.5
Uncharacterized protein.
      
 0.663
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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