STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZK121.2Protein ZK121.2 (ZK121.2) mRNA, complete cds (558 aa)    
Predicted Functional Partners:
C54G10.4
SLC (SoLute Carrier) homolog; Protein C54G10.4, isoform a (C54G10.4) mRNA, complete cds; Belongs to the mitochondrial carrier (TC 2.A.29) family
      
 0.688
C16B8.3
Protein C16B8.3 (C16B8.3) mRNA, complete cds
   
   0.662
lec-10
Galectin; Protein LEC-10 (lec-10) mRNA, complete cds
   
   0.662
Y55F3AM.3
Protein Y55F3AM.3, isoform a
    
 
 0.653
eya-1
Eyes absent homolog; Protein EYA-1, isoform a (eya-1) mRNA, complete cds
   
   0.651
F32B4.4
Protein F32B4.4, isoform a
   
   0.648
alp-1
ALP/Enigma encoding; Protein ALP-1, isoform d
   
 
 0.647
arrd-7
ARRestin Domain protein; Protein ARRD-7 (arrd-7) mRNA, complete cds
   
   0.645
T26A8.4
Protein T26A8.4 (T26A8.4) mRNA, complete cds
   
   0.641
vab-3
Variable abnormal-3; Protein VAB-3, isoform a
    
 
 0.639
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Caenorhabditis elegans, Rhabditis elegans, roundworm
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