STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZK550.6Probable phytanoyl-CoA dioxygenase; Converts phytanoyl-CoA to 2-hydroxyphytanoyl-CoA. (312 aa)    
Predicted Functional Partners:
B0334.3
Uncharacterized protein; Belongs to the TPP enzyme family.
   
  
 0.933
ZK550.5
Uncharacterized protein.
  
  
0.905
acox-3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
  
 0.885
prx-6
AAA domain-containing protein.
   
  
 0.842
prx-1
AAA domain-containing protein.
   
  
 0.810
gstk-1
Glutathione S-transferase kappa 1.
   
  
 0.768
acox-1.3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 
 0.688
dhs-28
SCP2 domain-containing protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.688
alh-13
Probable delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
   
  
 0.685
Y25C1A.13
Uncharacterized protein.
   
  
 0.664
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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