STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_06970Putative ABC transporter permease protein. (373 aa)    
Predicted Functional Partners:
SLG_06950
HlyD family secretion protein.
 
  
 0.967
SLG_06960
Putative ABC transporter.
 
 
0.936
SLG_03030
Putative ABC transporter ATP-binding protein.
  
 0.826
SLG_06940
Efflux pump outer membrane protein.
     
 0.785
SLG_03040
HlyD family secretion protein.
 
  
 0.613
SLG_06980
UspA family protein.
  
    0.609
SLG_03020
Putative ABC transporter permease protein.
 
  
 
0.557
SLG_03010
Putative ABC transporter permease protein.
 
  
 
0.552
adh-2
Zn-dependent alcohol dehydrogenase.
  
    0.446
SLG_34430
Putative ABC transporter ATP-binding protein.
 
  
 0.410
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.