STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_10500Conserved hypothetical protein. (425 aa)    
Predicted Functional Partners:
SLG_03840
Putative signaling protein.
 
  
 0.811
SLG_00910
Hypothetical protein.
 
 
 0.747
SLG_10080
Conserved hypothetical membrane protein.
 
  
 0.724
SLG_33580
Putative signaling protein.
 
  
 0.700
SLG_20360
Hypothetical protein.
 
   
 0.699
SLG_12330
Hypothetical protein.
 
 
 0.696
SLG_29350
Hypothetical protein.
 
 
 0.696
SLG_22500
Putative signaling protein.
 
  
 0.694
SLG_36390
Conserved hypothetical protein.
 
 
 0.680
SLG_11420
Conserved hypothetical protein.
 
 
 0.672
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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