STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_23650Putative M2 family peptidase. (632 aa)    
Predicted Functional Partners:
SLG_23660
Putative hydrolase.
     
 0.751
SLG_30860
Putative M28 family peptidase.
 
   
 0.631
SLG_30810
Putative M13 family peptidase.
  
   
 0.585
SLG_23670
MarR family transcriptional regulator.
       0.513
SLG_23690
Multidrug resistance protein B; Belongs to the major facilitator superfamily.
       0.504
SLG_29840
Peptidase M28 family protein.
 
   
 0.504
SLG_13250
Putative hydrolase.
  
    0.502
SLG_21780
Conserved hypothetical protein.
  
     0.458
SLG_23680
Multidrug resistance protein A.
     
 0.450
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.445
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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