azo1582 protein (Azoarcus sp. BH72) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

azo1582

HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family. (294 aa)

Predicted Functional Partners:

nqo1

0.669

rpoA

0.462

lysR

0.423

rpoB

0.423

rpoZ

0.419

rpoC

0.404

Your Current Organism:

Azoarcus sp. BH72

NCBI taxonomy Id: 62928
Other names: A. sp. BH72

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
azo1582	lysR	azo1582	azo0583	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	Putative transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.	0.423
azo1582	nqo1	azo1582	azo1583	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	NAD(P)H dehydrogenase [quinone] 1 (EC 1.6.5.2) (Quinone reductase 1) (QR1) (DT-diaphorase) (DTD) (Azoreductase) (Phylloquinone reductase) (Menadione reductase). The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinons involved in detoxification pathways as well as in biosynthetic processes such as the vitamin K-dependent gamma-carboxylation of glutamate residues in prothrombin synthesis (By similarity). trembl:Q9I4B4:72%identity; 81% similarity InterPro: NAD(P)H dehydrogenase (quinone) InterPro:IPR003680; NADHdh_2. Pfam:PF02525; Flavo [...]	0.669
azo1582	rpoA	azo1582	azo3391	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.462
azo1582	rpoB	azo1582	azo3424	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.423
azo1582	rpoC	azo1582	azo3423	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.404
azo1582	rpoZ	azo1582	azo3952	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.419
lysR	azo1582	azo0583	azo1582	Putative transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	0.423
lysR	rpoA	azo0583	azo3391	Putative transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.462
lysR	rpoB	azo0583	azo3424	Putative transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.423
lysR	rpoC	azo0583	azo3423	Putative transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.404
lysR	rpoZ	azo0583	azo3952	Putative transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.	DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.505
nqo1	azo1582	azo1583	azo1582	NAD(P)H dehydrogenase [quinone] 1 (EC 1.6.5.2) (Quinone reductase 1) (QR1) (DT-diaphorase) (DTD) (Azoreductase) (Phylloquinone reductase) (Menadione reductase). The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinons involved in detoxification pathways as well as in biosynthetic processes such as the vitamin K-dependent gamma-carboxylation of glutamate residues in prothrombin synthesis (By similarity). trembl:Q9I4B4:72%identity; 81% similarity InterPro: NAD(P)H dehydrogenase (quinone) InterPro:IPR003680; NADHdh_2. Pfam:PF02525; Flavo [...]	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	0.669
rpoA	azo1582	azo3391	azo1582	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	0.462
rpoA	lysR	azo3391	azo0583	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.	0.462
rpoA	rpoB	azo3391	azo3424	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	azo3391	azo3423	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
rpoA	rpoZ	azo3391	azo3952	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.997
rpoB	azo1582	azo3424	azo1582	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	HTH-type transcriptional activator,; Specificity unclear; Belongs to the LysR transcriptional regulatory family.	0.423
rpoB	lysR	azo3424	azo0583	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative transcriptional regulator, LysR family,; Family membership; Belongs to the LysR transcriptional regulatory family.	0.423
rpoB	rpoA	azo3424	azo3391	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999