STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_0422Hypothetical protein. (140 aa)    
Predicted Functional Partners:
N177_0420
Hypothetical protein.
       0.786
N177_0421
Hypothetical protein.
       0.773
N177_2144
Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly.
  
    0.744
N177_2147
Flp pilus assembly protein RcpC/CpaB.
  
    0.710
N177_2142
Flp pilus assembly protein TadB.
  
  
 0.704
N177_2143
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
  
    0.483
N177_0419
Transcriptional regulator, XRE family.
       0.470
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.