STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N177_1471Secreted alkaline phosphatase. (528 aa)    
Predicted Functional Partners:
folE
GTP cyclohydrolase I type 1.
    
 0.756
N177_1470
Transcriptional regulator, MarR family.
 
     0.582
N177_1469
Multidrug resistance transporter, Bcr/CflA family.
       0.502
N177_2635
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.498
N177_1472
Putative zinc metalloprotease; Belongs to the peptidase M50B family.
       0.491
N177_1433
Glycerophosphoryl diester phosphodiesterase.
  
 
 0.487
N177_0488
Choline-sulfatase.
    
  0.444
N177_3469
Putative phosphatase.
 
  
 0.426
Your Current Organism:
Lutibaculum baratangense
NCBI taxonomy Id: 631454
Other names: L. baratangense AMV1, Lutibaculum baratangense AMV1, Phyllobacteriaceae bacterium AMV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.