STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_04520Hypothetical protein. (195 aa)    
Predicted Functional Partners:
ROP_04510
Putative epoxide hydrolase.
 
     0.824
ROP_03490
Putative MerR family transcriptional regulator.
  
     0.629
ROP_52140
Putative hydrolase.
 
     0.540
ROP_02950
Hypothetical protein.
  
     0.498
ROP_29880
Hypothetical protein.
 
     0.494
ROP_41420
Hypothetical protein.
 
     0.489
ROP_52030
Hypothetical protein.
 
     0.489
ROP_03480
Hypothetical protein.
  
     0.468
vgb
Streptogramin lyase family protein; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2- amino-butenoic acid.
  
     0.467
ROP_24690
Hypothetical protein.
  
     0.461
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.