Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_00440 | ROP_05710 | ROP_00440 | ROP_05710 | Hypothetical protein. | Putative 5'-3' exonuclease. | 0.728 |
ROP_00440 | ROP_18740 | ROP_00440 | ROP_18740 | Hypothetical protein. | Putative MerR family transcriptional regulator. | 0.777 |
ROP_00440 | ROP_51690 | ROP_00440 | ROP_51690 | Hypothetical protein. | Hypothetical protein. | 0.788 |
ROP_00440 | ROP_52850 | ROP_00440 | ROP_52850 | Hypothetical protein. | Hypothetical protein. | 0.793 |
ROP_00440 | dnaN | ROP_00440 | ROP_34840 | Hypothetical protein. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.773 |
ROP_00440 | ku | ROP_00440 | ROP_69900 | Hypothetical protein. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.882 |
ROP_00440 | ligB | ROP_00440 | ROP_13440 | Hypothetical protein. | ATP-dependent DNA ligase LigB; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.736 |
ROP_00440 | ligC | ROP_00440 | ROP_51680 | Hypothetical protein. | ATP-dependent DNA ligase LigC. | 0.791 |
ROP_00440 | polA | ROP_00440 | ROP_07190 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.785 |
ROP_05710 | ROP_00440 | ROP_05710 | ROP_00440 | Putative 5'-3' exonuclease. | Hypothetical protein. | 0.728 |
ROP_05710 | ROP_18740 | ROP_05710 | ROP_18740 | Putative 5'-3' exonuclease. | Putative MerR family transcriptional regulator. | 0.925 |
ROP_05710 | ROP_51690 | ROP_05710 | ROP_51690 | Putative 5'-3' exonuclease. | Hypothetical protein. | 0.480 |
ROP_05710 | ROP_52850 | ROP_05710 | ROP_52850 | Putative 5'-3' exonuclease. | Hypothetical protein. | 0.409 |
ROP_05710 | dnaN | ROP_05710 | ROP_34840 | Putative 5'-3' exonuclease. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.933 |
ROP_05710 | ligA | ROP_05710 | ROP_65220 | Putative 5'-3' exonuclease. | NAD(+)-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.403 |
ROP_05710 | ligB | ROP_05710 | ROP_13440 | Putative 5'-3' exonuclease. | ATP-dependent DNA ligase LigB; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.734 |
ROP_05710 | ligC | ROP_05710 | ROP_51680 | Putative 5'-3' exonuclease. | ATP-dependent DNA ligase LigC. | 0.813 |
ROP_05710 | polA | ROP_05710 | ROP_07190 | Putative 5'-3' exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.604 |
ROP_18740 | ROP_00440 | ROP_18740 | ROP_00440 | Putative MerR family transcriptional regulator. | Hypothetical protein. | 0.777 |
ROP_18740 | ROP_05710 | ROP_18740 | ROP_05710 | Putative MerR family transcriptional regulator. | Putative 5'-3' exonuclease. | 0.925 |
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