STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemLProtein synonym:glutamate-1-semialdehyde 2,1-aminomutase. (441 aa)    
Predicted Functional Partners:
hemB
Delta-aminolevulinic acid dehydratase; Protein synonym:porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.994
hemA
Putative glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.993
resA
Cytochrome c biogenesis protein ResA; Protein synonym:thiol-disulfide oxidoreductase.
  
  
 0.973
ROP_17100
Phosphoglycerate mutase family protein.
  
    0.963
ccdA
Cytochrome c biogenesis protein CcdA; Protein synonym:thiol-disulfide oxidoreductase.
  
  
 0.961
ROP_19250
Putative non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.941
resC
Putative cytochrome c biogenesis protein ResC.
 
  
 0.931
ROP_57920
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.925
resB
Putative cytochrome c biogenesis protein ResB.
 
  
 0.922
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
 0.920
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
Server load: medium (74%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.