Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_06140 | ROP_06150 | ROP_06140 | ROP_06150 | Hypothetical protein. | Hypothetical protein. | 0.977 |
ROP_06140 | ROP_10940 | ROP_06140 | ROP_10940 | Hypothetical protein. | Hypothetical protein. | 0.550 |
ROP_06140 | ROP_56130 | ROP_06140 | ROP_56130 | Hypothetical protein. | Hypothetical protein. | 0.443 |
ROP_06140 | mshA | ROP_06140 | ROP_17450 | Hypothetical protein. | Putative glycosyltransferase MshA; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. | 0.426 |
ROP_06140 | mshB | ROP_06140 | ROP_59960 | Hypothetical protein. | N-acetyl-1-D-myo-Inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase MshB; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway. | 0.717 |
ROP_06140 | mshC | ROP_06140 | ROP_06130 | Hypothetical protein. | cysteine--1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily. | 0.914 |
ROP_06140 | mshD | ROP_06140 | ROP_49430 | Hypothetical protein. | Acetyltransferase MshD; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol. | 0.647 |
ROP_06150 | ROP_06140 | ROP_06150 | ROP_06140 | Hypothetical protein. | Hypothetical protein. | 0.977 |
ROP_06150 | ROP_10940 | ROP_06150 | ROP_10940 | Hypothetical protein. | Hypothetical protein. | 0.505 |
ROP_06150 | mshA | ROP_06150 | ROP_17450 | Hypothetical protein. | Putative glycosyltransferase MshA; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. | 0.421 |
ROP_06150 | mshB | ROP_06150 | ROP_59960 | Hypothetical protein. | N-acetyl-1-D-myo-Inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase MshB; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway. | 0.649 |
ROP_06150 | mshC | ROP_06150 | ROP_06130 | Hypothetical protein. | cysteine--1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily. | 0.899 |
ROP_06150 | mshD | ROP_06150 | ROP_49430 | Hypothetical protein. | Acetyltransferase MshD; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol. | 0.523 |
ROP_10940 | ROP_06140 | ROP_10940 | ROP_06140 | Hypothetical protein. | Hypothetical protein. | 0.550 |
ROP_10940 | ROP_06150 | ROP_10940 | ROP_06150 | Hypothetical protein. | Hypothetical protein. | 0.505 |
ROP_10940 | ROP_56130 | ROP_10940 | ROP_56130 | Hypothetical protein. | Hypothetical protein. | 0.753 |
ROP_10940 | mshA | ROP_10940 | ROP_17450 | Hypothetical protein. | Putative glycosyltransferase MshA; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. | 0.576 |
ROP_10940 | mshB | ROP_10940 | ROP_59960 | Hypothetical protein. | N-acetyl-1-D-myo-Inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase MshB; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway. | 0.743 |
ROP_10940 | mshC | ROP_10940 | ROP_06130 | Hypothetical protein. | cysteine--1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily. | 0.667 |
ROP_10940 | mshD | ROP_10940 | ROP_49430 | Hypothetical protein. | Acetyltransferase MshD; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol. | 0.810 |
page 1 of 4