STRINGSTRING
DJ40_1005 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_1005" - Uncharacterized protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_1005Uncharacterized protein (285 aa)    
Predicted Functional Partners:
ddc_1
annotation not available (471 aa)
              0.778
DJ40_3292
annotation not available (3103 aa)
   
          0.763
DJ40_1901
Phage-related protein (122 aa)
   
          0.760
estA
Autotrans_barl- outer membrane autotransporter barrel domain protein (728 aa)
   
          0.753
DJ40_11
Rhs_assc_core- RHS repeat-associated core domain protein (982 aa)
   
          0.752
DJ40_3356
Phage protein (108 aa)
   
          0.750
DJ40_2213
annotation not available (393 aa)
   
          0.747
DJ40_2606
annotation not available (5813 aa)
   
          0.746
yadA_2
Hemagluttinin domain-containing protein; yadA-like C-terminal region family protein (615 aa)
   
          0.743
spvB
annotation not available (1505 aa)
   
          0.743
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
Server load: low (9%) [HD]