STRINGSTRING
urtE protein (Yersinia pseudotuberculosis) - STRING interaction network
"urtE" - urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
urtEurea_trans_UrtE- urea ABC transporter, ATP-binding protein UrtE (232 aa)    
Predicted Functional Partners:
urtC
Branched chain amino acid ABC transporter permease; urea_trans_UrtC- urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family (358 aa)
 
  0.994
urtB
urea_trans_UrtB- urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family (519 aa)
 
  0.993
livK1
annotation not available (422 aa)
 
  0.988
urtD
urea_trans_UrtD- urea ABC transporter, ATP-binding protein UrtD (278 aa)
 
 
0.972
livG
annotation not available (255 aa)
 
 
0.710
livM
annotation not available (428 aa)
   
  0.674
livH
annotation not available (308 aa)
   
  0.556
DJ40_1005
Uncharacterized protein (285 aa)
              0.553
ddc_1
annotation not available (471 aa)
              0.514
hisB
annotation not available (355 aa)
     
        0.459
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
Server load: low (10%) [HD]