STRINGSTRING
livF_1 protein (Yersinia pseudotuberculosis) - STRING interaction network
"livF_1" - annotation not available in Yersinia pseudotuberculosis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livF_1annotation not available (236 aa)    
Predicted Functional Partners:
urtC
Branched chain amino acid ABC transporter permease; urea_trans_UrtC- urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family (358 aa)
   
  0.865
urtB
urea_trans_UrtB- urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family (519 aa)
   
  0.843
livK1
annotation not available (422 aa)
 
 
  0.819
livG
annotation not available (255 aa)
 
 
0.698
livM
annotation not available (428 aa)
   
  0.616
hisB
annotation not available (355 aa)
     
        0.459
livH
annotation not available (308 aa)
   
  0.457
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (959 aa)
         
  0.426
hisE
Histidine biosynthesis bifunctional protein HisIE; histidine_hisI- phosphoribosyl-ATP diphosphatase; In the N-terminal section; belongs to the PRA-CH family (204 aa)
     
        0.414
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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