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ybgC protein (Yersinia pseudotuberculosis) - STRING interaction network
"ybgC" - thio_ybgC: tol-pal system-associated acyl-CoA thioesterase in Yersinia pseudotuberculosis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgCthio_ybgC- tol-pal system-associated acyl-CoA thioesterase (133 aa)    
Predicted Functional Partners:
tolQ
tolQ- protein TolQ (228 aa)
   
  0.988
tolR
tolR- protein TolR (142 aa)
 
   
  0.947
cydB
cydB- cytochrome d ubiquinol oxidase, subunit II (379 aa)
            0.868
tolB
Protein TolB; Involved in the TonB-independent uptake of proteins (430 aa)
   
   
  0.758
tolA
Cell envelope integrity inner membrane protein TolA; tolA_full- protein TolA (388 aa)
   
   
  0.757
DJ40_1093
cyd_oper_ybgE- cyd operon protein YbgE (99 aa)
         
  0.665
ygbF
Cell division coordinator CpoB; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division (269 aa)
   
   
  0.647
pal
Pal_lipo- peptidoglycan-associated lipoprotein; Belongs to the ompA family (168 aa)
         
  0.620
nifJ
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1177 aa)
   
   
  0.591
tesB
tesB- acyl-CoA thioesterase II (286 aa)
   
   
  0.528
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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