STRINGSTRING
acoR protein (Yersinia pseudotuberculosis) - STRING interaction network
"acoR" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acoRannotation not available (600 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (477 aa)
 
     
  0.820
dhaK
annotation not available (333 aa)
   
 
  0.701
dhaL
dha_L_ycgS- dihydroxyacetone kinase, L subunit (224 aa)
     
      0.679
aldB
annotation not available (506 aa)
 
 
 
  0.659
gabR
annotation not available (501 aa)
           
  0.596
ptsH
annotation not available (85 aa)
           
  0.591
tyrA
annotation not available (373 aa)
           
  0.583
yhjK
annotation not available (671 aa)
           
  0.582
thrC
thrC- threonine synthase (429 aa)
           
  0.582
ydfG
annotation not available (249 aa)
              0.552
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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