STRINGSTRING
capB protein (Yersinia pseudotuberculosis) - STRING interaction network
"capB" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capBannotation not available (159 aa)    
Predicted Functional Partners:
DJ40_485
Protein of uncharacterised function (DUF2594) (74 aa)
   
          0.666
DJ40_25
YjbD family (DUF3811) (87 aa)
   
          0.583
DJ40_967
annotation not available (80 aa)
   
          0.521
DJ40_3680
Putative periplasmic or exported protein (221 aa)
   
          0.472
DJ40_153
annotation not available (71 aa)
   
          0.465
DJ40_627
Nucleoprotein/polynucleotide-associated enzyme (179 aa)
 
          0.440
DJ40_3681
annotation not available (340 aa)
   
          0.437
DJ40_1185
annotation not available (69 aa)
              0.425
DJ40_2204
annotation not available (208 aa)
   
          0.416
eamA
annotation not available (308 aa)
   
        0.409
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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