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pbpC protein (Yersinia pseudotuberculosis) - STRING interaction network
"pbpC" - PBP_1c: penicillin-binding protein 1C in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpCPBP_1c- penicillin-binding protein 1C (787 aa)    
Predicted Functional Partners:
DJ40_1205
annotation not available (1995 aa)
 
  0.990
mrcA
Peptidoglycan synthetase; PBP_1a_fam- penicillin-binding , 1A family protein (851 aa)
   
   
0.839
mrcB
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (826 aa)
   
   
0.829
ftsI
Peptidoglycan D,D-transpeptidase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily (587 aa)
           
  0.686
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily (434 aa)
           
  0.594
DJ40_4136
annotation not available (81 aa)
           
  0.591
DJ40_4060
annotation not available (81 aa)
           
  0.591
hutF
hutF- formiminoglutamate deiminase (456 aa)
           
  0.591
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (207 aa)
           
  0.585
DJ40_3236
Conserved hypothetical protein (702 aa)
   
          0.470
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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