STRINGSTRING
nlp-2 protein (Yersinia pseudotuberculosis) - STRING interaction network
"nlp-2" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nlp-2annotation not available (81 aa)    
Predicted Functional Partners:
rof
annotation not available (86 aa)
   
        0.618
DJ40_1208
annotation not available (36 aa)
              0.594
yiiS
DUF406 domain-containing protein (98 aa)
   
          0.572
holE
annotation not available (76 aa)
   
          0.564
yfaZ
annotation not available (180 aa)
   
          0.560
ydgH
annotation not available (317 aa)
   
          0.555
wecD
dTDP-fucosamine acetyltransferase; Catalyzes the acetylation of dTDP-fucosamine (dTDP-4- amino-4,6-dideoxy-D-galactose) to dTDP-Fuc4NAc, which is utilized in the biosynthesis of the enterobacterial common antigen (ECA); Belongs to the WecD family (245 aa)
   
          0.546
DJ40_2840
Membrane protein (80 aa)
   
          0.538
DJ40_2001
Putative lipoprotein (132 aa)
   
          0.532
wzyE
Probable ECA polymerase; Probably involved in the polymerization of enterobacterial common antigen (ECA) trisaccharide repeat units; Belongs to the WzyE family (454 aa)
   
          0.527
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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