STRINGSTRING
araC protein (Yersinia pseudotuberculosis) - STRING interaction network
"araC" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araCannotation not available (310 aa)    
Predicted Functional Partners:
rhaS
HTH-type transcriptional activator RhaS; Activates expression of the rhaBAD and rhaT operons (273 aa)
   
 
 
  0.729
rafR
annotation not available (338 aa)
   
     
  0.638
lysR
annotation not available (313 aa)
           
  0.621
araF
annotation not available (327 aa)
 
 
      0.614
araH
annotation not available (302 aa)
 
 
      0.614
araB
L-ribulokinase- L-ribulokinase; Belongs to the ribulokinase family (567 aa)
 
     
  0.601
lacI
annotation not available (357 aa)
           
  0.597
yiiS
DUF406 domain-containing protein (98 aa)
           
  0.592
yfuA
annotation not available (339 aa)
           
  0.592
ompR
annotation not available (239 aa)
           
  0.592
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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