STRINGSTRING
apxIB protein (Yersinia pseudotuberculosis) - STRING interaction network
"apxIB" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apxIBannotation not available (712 aa)    
Predicted Functional Partners:
hlyD
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (456 aa)
   
  0.989
prsE
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (442 aa)
   
  0.827
apxIB_2
Toxin ABC transporter ATP-binding protein/permease; type_I_sec_HlyB- type I secretion system ATPase family protein (715 aa)
 
       
0.798
DJ40_398
annotation not available (425 aa)
   
          0.490
abgR
annotation not available (286 aa)
   
          0.462
hxuB
annotation not available (596 aa)
   
          0.451
prtA
annotation not available (444 aa)
 
   
  0.423
rcsB_2
annotation not available (196 aa)
 
   
  0.420
higA_1
annotation not available (107 aa)
   
        0.415
DJ40_698
annotation not available (786 aa)
   
     
  0.404
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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