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hlyD protein (Yersinia pseudotuberculosis) - STRING interaction network
"hlyD" - type_I_hlyD: type I secretion membrane fusion , HlyD family protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hlyDtype_I_hlyD- type I secretion membrane fusion , HlyD family protein (456 aa)    
Predicted Functional Partners:
apxIB
annotation not available (712 aa)
   
  0.989
apxIB_2
Toxin ABC transporter ATP-binding protein/permease; type_I_sec_HlyB- type I secretion system ATPase family protein (715 aa)
   
  0.985
apxIB_3
annotation not available (704 aa)
   
  0.787
bvgS
annotation not available (1330 aa)
   
 
 
  0.643
hasD
ABC transporter; type_I_sec_PrtD- type I secretion system ATPase family protein (602 aa)
   
  0.637
yeiH
Membrane protein; Belongs to the UPF0324 family (362 aa)
           
  0.596
gsp
annotation not available (386 aa)
           
  0.596
tolC
annotation not available (464 aa)
   
 
  0.575
macB
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides (649 aa)
   
 
  0.548
macB_5
annotation not available (669 aa)
   
 
  0.548
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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