STRINGSTRING
ddhC protein (Yersinia pseudotuberculosis) - STRING interaction network
"ddhC" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddhCannotation not available (437 aa)    
Predicted Functional Partners:
rfbG
CDP-D-glucose-4,6-dehydratase; CDP_4_6_dhtase- CDP-glucose 4,6-dehydratase (357 aa)
 
 
  0.998
rfbJ
CDP-abequose synthase; The CDP-abequose synthase is involved in lipopolysaccharides (LPS) synthesis containing abequose which are important antigens of the cell surface responsible for the serological O specificity. Derivatives of the 3,6-dideoxyhexose group have a particular highly immunogenic character (283 aa)
 
 
  0.997
rfbF
G1P_cyt_trans- glucose-1-phosphate cytidylyltransferase (257 aa)
 
   
  0.987
ascD
annotation not available (329 aa)
 
   
  0.963
wzxE
Lipid III flippase; Mediates the transbilayer movement of Und-PP-GlcNAc- ManNAcA-Fuc4NAc (lipid III) from the inner to the outer leaflet of the cytoplasmic membrane during the assembly of enterobacterial common antigen (ECA); Belongs to the polysaccharide transport (PST) (TC 2.A.66.2) family (418 aa)
 
   
  0.646
rfbE
annotation not available (145 aa)
 
   
  0.630
DJ40_1354
annotation not available (345 aa)
 
   
  0.601
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as ’pretransfer’ editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated ’posttransfer’ editing and involves deacy [...] (572 aa)
         
  0.594
udk
Udk- uridine kinase (213 aa)
           
  0.590
prk
annotation not available (289 aa)
           
  0.590
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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