STRINGSTRING
priC protein (Yersinia pseudotuberculosis) - STRING interaction network
"priC" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
priCannotation not available (178 aa)    
Predicted Functional Partners:
DJ40_1675
Protein of uncharacterised function (DUF721) (174 aa)
   
          0.761
thiK
Thiamine kinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate (268 aa)
   
          0.705
DJ40_2113
Lipoprotein (217 aa)
   
          0.690
DJ40_926
annotation not available (114 aa)
   
          0.688
DJ40_1942
annotation not available (115 aa)
   
          0.665
holD
DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The exact function of the psi subunit is unknown (145 aa)
   
          0.632
damX
Cell division protein DamX; Non-essential cell division protein (329 aa)
   
          0.630
DJ40_3670
annotation not available (355 aa)
   
          0.623
DJ40_3448
Membrane protein (156 aa)
   
          0.617
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins (468 aa)
       
 
  0.596
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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