STRINGSTRING
ychN protein (Yersinia pseudotuberculosis) - STRING interaction network
"ychN" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ychNannotation not available (117 aa)    
Predicted Functional Partners:
acrR
annotation not available (218 aa)
            0.955
kefA
annotation not available (1120 aa)
          0.840
tusC
Protein TusC; Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions (121 aa)
   
 
  0.729
dsrH
Protein TusB; Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions (95 aa)
     
 
  0.705
yedF
Predicted transporter component; Belongs to the sulfur carrier protein TusA family (73 aa)
 
     
  0.636
icaB
annotation not available (427 aa)
   
          0.579
acrA
annotation not available (395 aa)
              0.564
feoC
Probable [Fe-S]-dependent transcriptional repressor; May function as a transcriptional regulator that controls feoABC expression (85 aa)
   
        0.541
acrB
annotation not available (1050 aa)
              0.537
yedE
YeeE/YedE family protein (404 aa)
 
          0.511
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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