STRINGSTRING
acrB protein (Yersinia pseudotuberculosis) - STRING interaction network
"acrB" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acrBannotation not available (1050 aa)    
Predicted Functional Partners:
acrA
annotation not available (395 aa)
  0.998
oprM
outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein (468 aa)
  0.982
ttgA
Multidrug efflux protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (376 aa)
  0.978
tolC
annotation not available (464 aa)
 
  0.932
bepF
HlyD family drug efflux protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (436 aa)
 
  0.865
acrR
annotation not available (218 aa)
         
  0.818
acrB_1
2A0602- RND transporter, hydrophobe/amphiphile efflux-1 family protein (1041 aa)
   
   
 
0.805
mdtA
Multidrug resistance protein MdtA; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (444 aa)
 
  0.697
rnd
Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family (373 aa)
           
  0.644
soxS
annotation not available (128 aa)
       
 
  0.627
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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