STRINGSTRING
csgA protein (Yersinia pseudotuberculosis) - STRING interaction network
"csgA" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csgAannotation not available (226 aa)    
Predicted Functional Partners:
tadF
annotation not available (190 aa)
   
     
  0.680
mbtB_2
High molecular weight siderophore biosynthesis protein; AA-adenyl-dom- amino acid adenylation domain protein (3889 aa)
   
 
  0.679
csgD
annotation not available (194 aa)
   
 
 
  0.666
tadG
annotation not available (518 aa)
   
     
  0.646
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate (208 aa)
           
  0.592
fimD
Fimbrial usher protein; papC N-terminal domain protein (883 aa)
           
  0.592
pilF
type_IV_pilW- type IV pilus biogenesis/stability protein PilW (249 aa)
         
  0.591
estA
Autotrans_barl- outer membrane autotransporter barrel domain protein (728 aa)
           
  0.581
tvaI
Maltodextrin glucosidase; Alpha amylase, N-terminal ig-like domain protein; Belongs to the glycosyl hydrolase 13 family (609 aa)
     
 
  0.540
DJ40_87
annotation not available (798 aa)
   
          0.525
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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