STRINGSTRING
ycgJ protein (Yersinia pseudotuberculosis) - STRING interaction network
"ycgJ" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycgJannotation not available (173 aa)    
Predicted Functional Partners:
cysC
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate (234 aa)
 
   
  0.705
mbtB_2
High molecular weight siderophore biosynthesis protein; AA-adenyl-dom- amino acid adenylation domain protein (3889 aa)
   
 
  0.585
mbtB_1
Pyochelin synthetase; AA-adenyl-dom- amino acid adenylation domain protein (1909 aa)
   
 
  0.543
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA (429 aa)
     
 
  0.528
rsmJ
Ribosomal RNA small subunit methyltransferase J; Specifically methylates the guanosine in position 1516 of 16S rRNA (256 aa)
     
   
  0.481
yafS
annotation not available (239 aa)
           
  0.474
DJ40_1450
annotation not available (84 aa)
              0.441
metH
metH- methionine synthase (1231 aa)
         
  0.413
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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