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ygaD protein (Yersinia pseudotuberculosis) - STRING interaction network
"ygaD" - annotation not available in Yersinia pseudotuberculosis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaDannotation not available (162 aa)    
Predicted Functional Partners:
nadD
Probable nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (220 aa)
 
 
  0.944
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP (401 aa)
   
 
  0.933
yfaY
annotation not available (397 aa)
     
  0.928
nadR
annotation not available (423 aa)
   
 
    0.905
surE
5’/3’-nucleotidase SurE; Nucleotidase with a broad substrate specificity as it can dephosphorylate various ribo- and deoxyribonucleoside 5’- monophosphates and ribonucleoside 3’-monophosphates with highest affinity to 3’-AMP. Also hydrolyzes polyphosphate (exopolyphosphatase activity) with the preference for short-chain- length substrates (P20-25). Might be involved in the regulation of dNTP and NTP pools, and in the turnover of 3’-mononucleotides produced by numerous intracellular RNases (T1, T2, and F) during the degradation of various RNAs (254 aa)
   
 
    0.903
nudC
annotation not available (260 aa)
     
 
    0.903
nadC
Quinolinate phosphoribosyltransferase; nadC- nicotinate-nucleotide diphosphorylase; Belongs to the NadC/ModD family (302 aa)
     
 
  0.902
yjjG
Nucleotidase; HAD-SF-IA-v1- HAD hydrolase, IA, variant 1 family protein (224 aa)
   
 
    0.902
DJ40_2636
GMP/IMP nucleotidase; HAD-SF-IA-v3- HAD hydrolase, IA, variant 3 family protein (226 aa)
       
    0.900
mazG
annotation not available (280 aa)
         
    0.900
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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