STRINGSTRING
ycaD protein (Yersinia pseudotuberculosis) - STRING interaction network
"ycaD" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycaDannotation not available (446 aa)    
Predicted Functional Partners:
yut
Urea_trans_yut- urea transporter (330 aa)
 
     
  0.659
argO
Arginine exporter protein ArgO; Involved in the export of arginine. Important to control the intracellular level of arginine and the correct balance between arginine and lysine (205 aa)
     
   
  0.597
sbcC
Periplasmic binding transport protein; Sbcc- exonuclease SbcC family protein (1229 aa)
     
   
  0.596
fabG11
annotation not available (356 aa)
     
   
  0.594
yeiH
Membrane protein; Belongs to the UPF0324 family (362 aa)
           
  0.593
yqjC
annotation not available (126 aa)
   
          0.548
deoR_2
annotation not available (314 aa)
              0.439
hlyD
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (456 aa)
       
 
  0.435
DJ40_431
annotation not available (335 aa)
           
  0.400
intS_4
annotation not available (402 aa)
           
  0.400
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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