STRINGSTRING
lsrB_3 protein (Yersinia pseudotuberculosis) - STRING interaction network
"lsrB_3" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsrB_3annotation not available (334 aa)    
Predicted Functional Partners:
lsrD_2
annotation not available (345 aa)
        0.881
rbsC_10
annotation not available (329 aa)
        0.807
araG_4
annotation not available (504 aa)
 
      0.763
rbsC_11
annotation not available (317 aa)
        0.687
lsrF
3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase; Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the transfer of an acetyl moiety from 3-hydroxy-5-phosphonooxypentane-2,4-dione to CoA to form glycerone phosphate and acetyl-CoA; Belongs to the DeoC/FbaB aldolase family (291 aa)
   
 
  0.672
lsrG
(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase; Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the conversion of (4S)-4-hydroxy-5- phosphonooxypentane-2,3-dione (P-DPD) to 3-hydroxy-5- phosphonooxypentane-2,4-dione (P-HPD); Belongs to the LsrG family (96 aa)
   
   
  0.650
rbsC_4
annotation not available (365 aa)
 
        0.639
rbsC_12
annotation not available (329 aa)
        0.629
lyx
annotation not available (498 aa)
 
   
  0.618
lsrD_1
annotation not available (333 aa)
   
  0.613
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
Server load: low (9%) [HD]