STRINGSTRING
cirA_3 protein (Yersinia pseudotuberculosis) - STRING interaction network
"cirA_3" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirA_3annotation not available (698 aa)    
Predicted Functional Partners:
mbtB_1
Pyochelin synthetase; AA-adenyl-dom- amino acid adenylation domain protein (1909 aa)
   
   
  0.837
tonB
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (252 aa)
   
 
  0.671
menF
Isochorismate synthase MenF; Catalyzes the conversion of chorismate to isochorismate (455 aa)
   
   
  0.656
fpvA
Outer membrane iron/siderophore receptor; tonB-siderophor- TonB-dependent siderophore receptor family protein (753 aa)
 
   
  0.623
lgrE
annotation not available (254 aa)
     
   
  0.612
oppA3
annotation not available (545 aa)
     
   
  0.598
sapF
annotation not available (271 aa)
     
   
  0.597
ycgG
annotation not available (526 aa)
           
  0.596
yhjH_1
annotation not available (230 aa)
           
  0.596
dtpA
Dipeptide and tripeptide permease A; Proton-dependent permease that transports di- and tripeptides (501 aa)
           
  0.596
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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