STRINGSTRING
sodC protein (Yersinia pseudotuberculosis) - STRING interaction network
"sodC" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodCannotation not available (201 aa)    
Predicted Functional Partners:
cadA
ATPase-IB2_Cd- cadmium-translocating P-type ATPase (782 aa)
     
 
  0.864
sodB
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (192 aa)
     
 
  0.855
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (207 aa)
     
 
  0.799
ahpC
Putative alkyl hydroperoxide reductase subunit c; C-terminal domain of 1-Cys peroxiredoxin family protein (200 aa)
     
 
  0.744
katA
annotation not available (477 aa)
   
 
  0.648
oxyR
annotation not available (305 aa)
           
  0.647
poxB
annotation not available (573 aa)
     
   
  0.641
katG
Catalase-peroxidase; Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity (737 aa)
     
   
  0.637
uspB
annotation not available (111 aa)
     
   
  0.634
DJ40_2304
annotation not available (243 aa)
   
 
  0.610
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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