STRINGSTRING
barA protein (Yersinia pseudotuberculosis) - STRING interaction network
"barA" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
barAannotation not available (939 aa)    
Predicted Functional Partners:
DJ40_625
annotation not available (209 aa)
   
 
  0.964
uhpA
annotation not available (196 aa)
   
 
  0.964
csrD
annotation not available (638 aa)
 
 
  0.958
phoP_1
annotation not available (235 aa)
 
  0.952
phoP_2
annotation not available (223 aa)
 
 
  0.948
bvgA
annotation not available (210 aa)
 
 
  0.936
nreC
annotation not available (210 aa)
 
 
  0.935
cheW
annotation not available (165 aa)
   
 
  0.933
rstA
Two-component system response regulator RstA; Transcriptional regulatory , C terminal family protein (248 aa)
 
 
  0.931
rcsB
Transcriptional regulatory protein RcsB; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions (217 aa)
   
 
  0.925
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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