STRINGSTRING
icaB protein (Yersinia pseudotuberculosis) - STRING interaction network
"icaB" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icaBannotation not available (427 aa)    
Predicted Functional Partners:
pgaC
pgaC_IcaA- poly-beta-1,6 N-acetyl-D-glucosamine synthase (444 aa)
   
   
  0.868
pgaD
Hemin storage system protein; PGA_PgaD- poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD (155 aa)
 
     
  0.689
pgaA
Outer membrane protein; PGA_TPR_OMP- poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA (822 aa)
   
   
  0.688
ompN
annotation not available (359 aa)
   
     
  0.642
feoC
Probable [Fe-S]-dependent transcriptional repressor; May function as a transcriptional regulator that controls feoABC expression (85 aa)
   
          0.641
purR
HTH-type transcriptional repressor PurR; Is the main repressor of the genes involved in the de novo synthesis of purine nucleotides, regulating purB, purC, purEK, purF, purHD, purL, purMN and guaBA expression. PurR is allosterically activated to bind its cognate DNA by binding the purine corepressors, hypoxanthine or guanine, thereby effecting transcription repression (341 aa)
           
  0.592
ychN
annotation not available (117 aa)
   
          0.579
hxuC_2
Hemin receptor; tonB-hemlactrns- TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein (676 aa)
   
          0.517
ompC
annotation not available (371 aa)
   
     
  0.513
DJ40_1144
annotation not available (473 aa)
   
 
      0.492
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
Server load: low (13%) [HD]