STRINGSTRING
can protein (Yersinia pseudotuberculosis) - STRING interaction network
"can" - Carbonic anhydrase in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
canCarbonic anhydrase; Reversible hydration of carbon dioxide (220 aa)    
Predicted Functional Partners:
DJ40_3410
Carbonic anhydrase; Reversible hydration of carbon dioxide (251 aa)
   
   
 
0.812
ychM
annotation not available (565 aa)
 
 
  0.718
katA
annotation not available (477 aa)
     
   
  0.684
proQ
RNA chaperone ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism (237 aa)
           
  0.594
fsa
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily (221 aa)
           
  0.593
DJ40_3406
Chondroitin sulfate ABC lyase; Broad-specificity glycosaminoglycan lyase (1037 aa)
           
  0.592
yadG
ABC transporter ATP-binding protein (308 aa)
     
      0.567
yadH
annotation not available (256 aa)
              0.536
nifJ
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1177 aa)
           
  0.530
yrdA
annotation not available (180 aa)
     
 
  0.510
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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