STRINGSTRING
hofB protein (Yersinia pseudotuberculosis) - STRING interaction network
"hofB" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hofBannotation not available (512 aa)    
Predicted Functional Partners:
gspF
annotation not available (399 aa)
 
  0.989
pilE1
Putative major pilin subunit; IV_pilin_GFxxxE- prepilin-type N-terminal cleavage/methylation domain protein (154 aa)
   
  0.958
hofF_2
annotation not available (348 aa)
 
 
  0.936
pilQ
Putative outer membrane porin HofQ; IV_pilus_PilQ- type IV pilus secretin PilQ family protein (455 aa)
 
 
  0.883
outO
annotation not available (280 aa)
 
   
  0.872
gspG
typeII_sec_gspG- type II secretion system protein G (145 aa)
 
 
  0.853
gspD
type_II_gspD- type II secretion system protein D (640 aa)
   
  0.770
DJ40_807
comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2 (763 aa)
 
   
  0.662
gspL
typeII_sec_gspL- type II secretion system protein L (396 aa)
   
 
  0.642
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA (732 aa)
     
        0.614
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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