STRINGSTRING
gspF protein (Yersinia pseudotuberculosis) - STRING interaction network
"gspF" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspFannotation not available (399 aa)    
Predicted Functional Partners:
hofB
annotation not available (512 aa)
 
  0.989
gspE
type_II_gspE- type II secretion system protein E (503 aa)
 
  0.971
outO
annotation not available (280 aa)
 
   
  0.969
pilE1
Putative major pilin subunit; IV_pilin_GFxxxE- prepilin-type N-terminal cleavage/methylation domain protein (154 aa)
 
   
  0.964
yggR
Pili biogenesis protein PilT-like ATPase; pilT_fam- twitching motility family protein (374 aa)
 
   
  0.956
pilQ
Putative outer membrane porin HofQ; IV_pilus_PilQ- type IV pilus secretin PilQ family protein (455 aa)
 
 
  0.941
gspG
typeII_sec_gspG- type II secretion system protein G (145 aa)
 
 
  0.910
gspJ
gspJ- type II secretion system protein J (198 aa)
 
   
  0.725
gspL
typeII_sec_gspL- type II secretion system protein L (396 aa)
         
  0.681
gspD
type_II_gspD- type II secretion system protein D (640 aa)
 
   
  0.678
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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